RetrogeneDB ID: | retro_fcat_153 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:49106804..49107401(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP6V1E1 | ||
Ensembl ID: | ENSFCAG00000008081 | ||
Aliases: | None | ||
Description: | ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1 [Source:HGNC Symbol;Acc:857] |
Percent Identity: | 54.07 % |
Parental protein coverage: | 89.82 % |
Number of stop codons detected: | 9 |
Number of frameshifts detected | 5 |
Parental | NEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK-QIEQQKKIQMSNLMNQARLKVLRARDDLIT |
N.K..............E...LVQT.RL.I.E.Y...E..Q...QK.I.MSNL.NQ..LKVL.AR.DL.T | |
Retrocopy | NRKTMRKEKRQRQCKTLERCNLVQTKRLNITE-YYEREN>QVV*QKEI*MSNL-NQENLKVL*ARSDLLT |
Parental | DLLNEAKQRLSKVVKDTTRYQVLLDGLVLQGLYQLLEPRMIVRCRKQDF-PLVKAAVQKAI-PMYKIATK |
D....AK..LSKVVKDTTR..VL...LV..GLYQLL...M.V.CR.Q...PL..A.VQK.I.P.....TK | |
Retrocopy | DP-RKAK*MLSKVVKDTTRH*VL-ETLVVKGLYQLL*LLMTVCCRNQVLLPLKAAEVQKLI<PCRQNPTK |
Parental | K-DVDVQIDQ-EAYLPEEIAGGVEIYNG-DRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKFLD |
K.D..V.IDQ.EAYL...IAG.VEI......KIKVSNTL.S.LDL....MMPE.R.ALFG.N.NRK.LD | |
Retrocopy | K<DAEV*IDQ<EAYLSD*IAGSVEIHDE<GHKIKVSNTLKSQLDLLGSGMMPEIR*ALFGMNSNRKVLD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 215 .20 RPM |
SRP017611_kidney | 0 .10 RPM | 126 .97 RPM |
SRP017611_liver | 0 .00 RPM | 25 .88 RPM |