RetrogeneDB ID: | retro_fcat_1537 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D3:22527806..22528151(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS20 | ||
Ensembl ID: | ENSFCAG00000029233 | ||
Aliases: | None | ||
Description: | ribosomal protein S20 [Source:HGNC Symbol;Acc:10405] |
Percent Identity: | 77.31 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MAFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPC |
MA.KDT.KTP.E.EVAI..IRIT.TS.NVKSLEKVCADLIRG......KVKGPV.MPTKTLRI.TR.TPC | |
Retrocopy | MASKDTRKTPMEQEVAILQIRITITSHNVKSLEKVCADLIRGTR----KVKGPVWMPTKTLRIITRETPC |
Parental | GEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA |
G.GSKT.D.F.MRIHKRL.DLH.PSEI.KQITSISIEPG.EV.VTI.DA | |
Retrocopy | GDGSKT*DHFHMRIHKRLTDLHNPSEIFKQITSISIEPGIEVDVTITDA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 55 .09 RPM |
SRP017611_kidney | 0 .00 RPM | 171 .18 RPM |
SRP017611_liver | 0 .10 RPM | 76 .53 RPM |