RetrogeneDB ID: | retro_fcat_1545 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D3:42869939..42870414(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNRPC | ||
Ensembl ID: | ENSFCAG00000005876 | ||
Aliases: | None | ||
Description: | small nuclear ribonucleoprotein polypeptide C [Source:HGNC Symbol;Acc:11157] |
Percent Identity: | 74.53 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | LSRFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPTPFSAP |
.S.FYC.YC.TYLTHDSPS.RK.HCSG.KHK.NVKDY.QKWMEE.AQSLI.K.T.AFQQGK.PPTPFS.. | |
Retrocopy | VSKFYCHYCKTYLTHDSPSMRKIHCSGQKHKKNVKDYFQKWMEEHAQSLIEKITVAFQQGKMPPTPFSVL |
Parental | PPAG-AMIPPPPSLPGPPRPGMMPAPHM-GGPPMMPMMGPPPPGMMPVGPAPGMRPPMGGHMPMMPGPPM |
PP.G.AMIPPPPSL.GP..PGMMPAPHM.GGPPMM.MMG.PPPGMMP.GP.P.M....GGHM..MPGPP. | |
Retrocopy | PPQG<AMIPPPPSLLGPLHPGMMPAPHM<GGPPMMQMMGLPPPGMMPMGPTPRMNLHTGGHMSKMPGPPV |
Parental | MRPPARPMMVPTRPGMTRPDR |
MRPPA.PMM.PT.PG...PD. | |
Retrocopy | MRPPAHPMMGPTWPGTNQPDK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 8 .95 RPM |
SRP017611_kidney | 0 .00 RPM | 8 .66 RPM |
SRP017611_liver | 0 .00 RPM | 6 .37 RPM |