RetrogeneDB ID: | retro_fcat_1549 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D3:46578472..46578789(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS17 | ||
Ensembl ID: | ENSFCAG00000002358 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S17 [Source:UniProtKB/Swiss-Prot;Acc:P63275] |
Percent Identity: | 70.27 % |
Parental protein coverage: | 80. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | FHTNKRVCEEIAIIPSKKL-RNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEII |
FH.N...CEEI.IIPSKKL..NKIA.YVTHLMKRIQ....RG.........R.RR.NYV.EVSALDQEII | |
Retrocopy | FHANEHICEEITIIPSKKL<HNKIASYVTHLMKRIQ----RGLVRGISPYCRRRRKNYVSEVSALDQEII |
Parental | EVDPDTKEMLKLLDFGSLSNLQV--TQPTVGMNFKTPRGAV |
EVD.D.KEMLKLLDFGSLSNLQV..TQ.T...NFKTPRG.V | |
Retrocopy | EVDSDSKEMLKLLDFGSLSNLQVVDTQSTIWINFKTPRGSV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 78 .16 RPM |
SRP017611_kidney | 0 .00 RPM | 347 .30 RPM |
SRP017611_liver | 0 .00 RPM | 177 .82 RPM |