RetrogeneDB ID: | retro_fcat_157 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:88119598..88120436(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GNAI2 | ||
Ensembl ID: | ENSFCAG00000007008 | ||
Aliases: | None | ||
Description: | guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2 [Source:HGNC Symbol;Acc:4385] |
Percent Identity: | 61.11 % |
Parental protein coverage: | 80.11 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 5 |
Parental | QYRAVVYSNTIQSIMAIVKAMGNLQIDFADPSRADDARQLFALSCTAEE-QGVLPEDLSGVIRRLWADHG |
Q..AV.YS.TIQ.IMA.VKAM..L.I.F..PS...DARQLF.LS.TAE..QGVLPE.L..VI.RL..D.G | |
Retrocopy | QSQAVLYSITIQPIMATVKAMDYLKIEFSGPSCTHDARQLFSLS*TAEG<QGVLPEGLPSVIHRLRSDPG |
Parental | VQACFGRSREYQLNDSAAYYLNDLERIAQSDYIPTQQDVLRTRVKTTGIVETHFTFKDLH-FKMFDVGGQ |
.Q...G...E.QL..SAA..L..L..I.QS.YIPT.QDV.....KTTGIVETH.TF.DL...K.FDVG.. | |
Retrocopy | LQVGSGCWLECQLHRSAAFDLTALGSITQSNYIPTEQDVPWSQEKTTGIVETHLTFRDLP<LKIFDVGSP |
Parental | RSERKKWIHCFEGVTAIIFCVALSAYDL-VLAEDEEMNRMHESMKLFDS-ICNNKW-FTDTSIILFLNKK |
RSE.KKWIHC.E.VTAII.C..L...DL.VLAEDEEM..MH..MKLFD....NN.W..TD.S.IL.LNK. | |
Retrocopy | RSESKKWIHCLESVTAIISCITLGTHDL<VLAEDEEMHHMHQNMKLFDNNFSNNQW<VTDWSTILVLNK- |
Parental | DLFEEKITHSPL-TICFPEYTGANKYDEAASYIQSKFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVT |
.LFE..ITH.P..T.CFPEY.GA.KYD..AS.IQ.K.E.L.K.KDTKE.Y.HFTCA..TKN..F.F.AV. | |
Retrocopy | NLFEQ-ITHTPI<TTCFPEYRGAKKYDQVASHIQGKSETLHKSKDTKETYMHFTCANHTKNLWFLFKAVS |
Parental | DVIIKNNL |
..II.NNL | |
Retrocopy | HIIIRNNL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 105 .48 RPM |
SRP017611_kidney | 0 .00 RPM | 60 .91 RPM |
SRP017611_liver | 0 .00 RPM | 49 .53 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ciona intestinalis | ENSCING00000005305 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000004925 | 1 retrocopy | |
Ciona savignyi | ENSCSAVG00000001800 | 1 retrocopy | |
Felis catus | ENSFCAG00000007008 | 1 retrocopy |
retro_fcat_157 ,
|
Otolemur garnettii | ENSOGAG00000012525 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000016592 | 1 retrocopy |