RetrogeneDB ID: | retro_fcat_1593 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D4:66546383..66546733(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000008469 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.88 % |
Parental protein coverage: | 95.12 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | RPAGNRTPETTNMSGR-LWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNT |
RP.GNRTP..T..SGR..WSKA.FAGYK.G..NQREHTALLKI.G.YA.DETEF..GKRCAYVYKAK.NT | |
Retrocopy | RPTGNRTPKMTTTSGR<MWSKAFFAGYKWGVWNQREHTALLKI*GAYALDETEF*TGKRCAYVYKAKKNT |
Parental | VTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVML |
VTP.GK.NK.RVIWGK.TRAHGN...V..KF.SNLPAK.I.H.I.V.L | |
Retrocopy | VTPDGKLNKSRVIWGKITRAHGNRDTVYDKF*SNLPAKTISHKIAVPL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 33 .05 RPM |
SRP017611_kidney | 0 .00 RPM | 153 .25 RPM |
SRP017611_liver | 0 .00 RPM | 88 .15 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Felis catus | ENSFCAG00000008469 | 36 retrocopies |
retro_fcat_1042, retro_fcat_1056, retro_fcat_1074, retro_fcat_1208, retro_fcat_1212, retro_fcat_1238, retro_fcat_1242, retro_fcat_1272, retro_fcat_1303, retro_fcat_1447, retro_fcat_1486, retro_fcat_1494, retro_fcat_150, retro_fcat_1529, retro_fcat_1553, retro_fcat_1589, retro_fcat_1593 , retro_fcat_1616, retro_fcat_163, retro_fcat_1633, retro_fcat_1731, retro_fcat_1962, retro_fcat_199, retro_fcat_209, retro_fcat_217, retro_fcat_250, retro_fcat_294, retro_fcat_346, retro_fcat_347, retro_fcat_408, retro_fcat_535, retro_fcat_608, retro_fcat_621, retro_fcat_679, retro_fcat_764, retro_fcat_813,
|