RetrogeneDB ID: | retro_fcat_1596 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D4:70477904..70478244(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000008652 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 65.52 % |
Parental protein coverage: | 59.57 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | GVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRT-NSTFNQVVLKRLFMSRTNRPPLSLSRMIRKM |
G....HNKDR....KEPKSQDI.LRLLV.LYR.LA..T..STFNQ..LKRLFMS.TN..PLSLS.M..KM | |
Retrocopy | GGHLHHNKDRNIWHKEPKSQDIHLRLLVNLYRSLAGQT<SSTFNQLLLKRLFMSCTNWWPLSLSSMTKKM |
Parental | KLPGR-ENKTAVVVGTITDDVRVQEVPKLKVCALRVSS--RARSRI |
KL..R.E.KTAV.VGTITDD...Q..PK.KVC.L.VS...RARS.I | |
Retrocopy | KLSAR<EDKTAVLVGTITDDMCIQVAPKWKVCTLHVSHILRARSKI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 36 .84 RPM |
SRP017611_kidney | 0 .00 RPM | 135 .93 RPM |
SRP017611_liver | 0 .00 RPM | 91 .28 RPM |