RetrogeneDB ID: | retro_fcat_1598 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D4:71660748..71661180(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000004260 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80.82 % |
Parental protein coverage: | 94.74 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | SKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYH- |
SK..QRLLAEPVP.IK.EP.ESNA.YFH.V.AGPQDS.FEG.TFK..LFLP.EY..AAPKV.F.TKIYH. | |
Retrocopy | SKKAQRLLAEPVPDIKTEPEESNAHYFHSVTAGPQDSSFEGRTFKFKLFLPKEYLTAAPKVHFRTKIYH< |
Parental | PNVDKLGRICL-DILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRL |
.NVD.LGRICL.DILKDKWS.ALQI.TVLL.IQALLSAPNPDDPLAND.AEQWKTN.AQAIET.RAWTRL | |
Retrocopy | SNVD*LGRICL>DILKDKWSSALQIHTVLLWIQALLSAPNPDDPLANDAAEQWKTNKAQAIETVRAWTRL |
Parental | YAMNNI |
YA.NNI | |
Retrocopy | YAINNI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 40 .63 RPM |
SRP017611_kidney | 0 .00 RPM | 18 .24 RPM |
SRP017611_liver | 0 .00 RPM | 8 .29 RPM |