RetrogeneDB ID: | retro_fcat_161 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:93249661..93249966(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNRPC | ||
Ensembl ID: | ENSFCAG00000005876 | ||
Aliases: | None | ||
Description: | small nuclear ribonucleoprotein polypeptide C [Source:HGNC Symbol;Acc:11157] |
Percent Identity: | 69.9 % |
Parental protein coverage: | 62.89 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LIDKTTAAFQQGKIPPTPFSAP--PPAGAMI-PPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMP |
LI.KT..AFQQGKIPPT.FSAP..PP.GAMI.P..PSL.GPP..GMMP.PHM.GP.MMP..GPPPPG.MP | |
Retrocopy | LINKTASAFQQGKIPPTLFSAPAPPPPGAMI<PDSPSLLGPPHLGMMPIPHMEGPSMMPTKGPPPPG*MP |
Parental | VGPAPGMRPPMGGHMPMMPGPPMMRPPARPMMV |
VG.A.GMR....G..P.MPG.PMMRPP.RP.MV | |
Retrocopy | VGLASGMRLLIRGCVPLMPGSPMMRPPTRPLMV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 8 .95 RPM |
SRP017611_kidney | 0 .00 RPM | 8 .66 RPM |
SRP017611_liver | 0 .00 RPM | 6 .37 RPM |