RetrogeneDB ID: | retro_fcat_1612 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D4:16465486..16466214(-) | ||
Located in intron of: | ENSFCAG00000011421 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MED6 | ||
Ensembl ID: | ENSFCAG00000013091 | ||
Aliases: | None | ||
Description: | mediator complex subunit 6 [Source:HGNC Symbol;Acc:19970] |
Percent Identity: | 87.55 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MAAVDIRDNLLGISWVDSS-WIPILNSGSVLDYFSERSNPFYDRTCNNEVVKMQRLTLEHLNQMVGVEYI |
MAAVDI.D.LLGISWVD.S.WIPILN.G.V.DY.SERSNPFYDRTCN.EVVKMQRLT...LNQMVGVEYI | |
Retrocopy | MAAVDIQDKLLGISWVDCS<WIPILNCGYVPDYISERSNPFYDRTCNDEVVKMQRLT---LNQMVGVEYI |
Parental | LLHAQEPILF-IIRKQQRQSPTQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAVHGIQSAFDEAMSYCR |
.LHAQEPILF.II.KQQRQS.TQVIPLA.Y.IIAGVIYQAPDLGSV.NSRVLT.VHGIQSAFDEA..YCR | |
Retrocopy | FLHAQEPILF>IIWKQQRQSSTQVIPLAGYCIIAGVIYQAPDLGSVVNSRVLTTVHGIQSAFDEAVLYCR |
Parental | YHPSK-GYWWHFKDHEEQDKVKPKAKRKEEPSSIFQRQRVDALLLDLRQKFPPKFVQQKSGEKPVPVDQT |
YHPS..GYWWHFKD.EEQDKVKPKAKRKEEPSSIFQRQRV.ALLLDLRQKFPPKF..QKSGEKPVPV.QT | |
Retrocopy | YHPSQ<GYWWHFKDREEQDKVKPKAKRKEEPSSIFQRQRVQALLLDLRQKFPPKFG*QKSGEKPVPVGQT |
Parental | KKEAEPIPETVKSEEKETTKNVQQIVSTKGPPEKRMRLQ |
KKEAEPIPETVKSEEKET.KNVQQI.STKGPPEKRMRLQ | |
Retrocopy | KKEAEPIPETVKSEEKETVKNVQQIGSTKGPPEKRMRLQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 5 .05 RPM |
SRP017611_kidney | 0 .00 RPM | 13 .50 RPM |
SRP017611_liver | 0 .00 RPM | 6 .87 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Felis catus | ENSFCAG00000013091 | 1 retrocopy |
retro_fcat_1612 ,
|
Myotis lucifugus | ENSMLUG00000017357 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000007174 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000001311 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000008957 | 1 retrocopy | |
Sorex araneus | ENSSARG00000002553 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000002302 | 1 retrocopy |