RetrogeneDB ID: | retro_fcat_1613 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D4:22380102..22380916(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BETA-ACTIN | ||
Ensembl ID: | ENSFCAG00000006788 | ||
Aliases: | None | ||
Description: | Beta-actin [Source:UniProtKB/TrEMBL;Acc:Q9GLY0] |
Percent Identity: | 62.24 % |
Parental protein coverage: | 77.22 % |
Number of stop codons detected: | 7 |
Number of frameshifts detected | 6 |
Parental | PEEHPVLLTEAPLNPKANREKMTQIMFE-TFNTPAMYVAI-QAVLSLYASGRTTGIVMDSGDGVTHTVPI |
P..HP.LLTEAPLN..AN.E.M.QI.F..T..T..MY..I.Q.VLSLY.SG.TTGIVM.SG..VTHTVPI | |
Retrocopy | PKKHPRLLTEAPLNVNAN*E-MIQITFR<TCCTLPMYMNI<QVVLSLYTSGYTTGIVMESGGQVTHTVPI |
Parental | YEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMAT-AASS- |
YEG.ALPH.IL.L.LAG.DL.DYL.KIL.....SFT..AE.EI..DI.E..CYV....EQEM....A.S. | |
Retrocopy | YEGCALPHSILYLVLAG*DLKDYLTKILM*HACSFTRLAE*EILNDIME-VCYV---LEQEMGS<TAASS |
Parental | SSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFN-SIMKCDVDIRKDLYANTVLSGG |
SSLEKSYELP..QVITIG...F..PE.LF.P.FL.MESCGIH.TTFN.S..K.D.D....LY...VLSGG | |
Retrocopy | SSLEKSYELPNSQVITIGHKQFWYPEVLF*PFFLAMESCGIHGTTFN>STVKYDED---TLYSYKVLSGG |
Parental | TTMYPG-IADRMQKEITALAP-STMKIKIIAPPERKYSVWIGG-SILASLSTFQQMWISKQEYDESGPSI |
TTMYPG.I.DR..K.I.ALAP.STM.IK.I.PPE........G.SILAS.ST.Q.MWI.KQ.Y.E..P.I | |
Retrocopy | TTMYPG<ITDRIWKDIMALAP>STM*IKSITPPEHS*VPSVDGGSILASVSTLQWMWINKQKYEEVDPAI |
Parental | VHRKCF |
V..KCF | |
Retrocopy | VLHKCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 366 .35 RPM |
SRP017611_kidney | 0 .00 RPM | 312 .16 RPM |
SRP017611_liver | 0 .00 RPM | 167 .81 RPM |