RetrogeneDB ID: | retro_fcat_1615 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D4:25039089..25039397(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000011782 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 67.31 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MAQFVRNLAEKAPALVNAAVTYSKPRLATFWHYAKVELVPPTPAEIPTAIQSLKK-IVKSAQTGSFKQLT |
M.QFV..L.EK.P.L..AAVT..KP.LA.FWH...V.LVPP...EIP..I...KK.IV.SAQTGSFKQ.T | |
Retrocopy | MIQFVHYLMEKPPSLGKAAVTLLKPTLAIFWH*TRVTLVPPISTEIPMNI*TCKK<IVTSAQTGSFKQFT |
Parental | VKEALLNGLVATEVWMWFYVGEIIGKRGIIGYDV |
VKEA.L.GLVA.EVWMWFYVG.IIG..GIIGY.V | |
Retrocopy | VKEAVLTGLVASEVWMWFYVGKIIGILGIIGYNV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 30 .41 RPM |
SRP017611_kidney | 0 .00 RPM | 85 .33 RPM |
SRP017611_liver | 0 .00 RPM | 24 .36 RPM |