RetrogeneDB ID: | retro_fcat_1664 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | E1:18245671..18246140(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNRPC | ||
Ensembl ID: | ENSFCAG00000005876 | ||
Aliases: | None | ||
Description: | small nuclear ribonucleoprotein polypeptide C [Source:HGNC Symbol;Acc:11157] |
Percent Identity: | 68.52 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | LSRFYCDYCDTYLTHDSPSVRKT-HCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPTPFSA |
....YCD.CDT.LTHDSPSVRKT.H.SGRKHKENVKDY.QKW.E........K....F...KIPP.PFSA | |
Retrocopy | MAGLYCDPCDTSLTHDSPSVRKT>HHSGRKHKENVKDY-QKWIESRLRA*PTKLPRHFS--KIPPPPFSA |
Parental | PPPAGAMIPPPPSLPGPPRPGMMPA-PHMGGPPMMPMMGPPPPGMMPVGPAPGMRPPMGGHMPMMPGPPM |
PPPA.AMIPPPP.LP.PPRPG.MP..P....P.MMP.MGPP.PGMMPVGPA.GMRP..GGHMP..PGPP. | |
Retrocopy | PPPAWAMIPPPPRLPSPPRPGIMPG>P*XXXPAMMPRMGPPSPGMMPVGPASGMRPSRGGHMPRTPGPPV |
Parental | MR-PPARPMMVPTRPGMTRPDR |
.R..PA.PMM.PTRPGMTRP.R | |
Retrocopy | VR<SPAHPMMAPTRPGMTRPGR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 8 .95 RPM |
SRP017611_kidney | 0 .00 RPM | 8 .66 RPM |
SRP017611_liver | 0 .00 RPM | 6 .37 RPM |