RetrogeneDB ID: | retro_fcat_1674 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | E1:43921190..43921595(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL32 | ||
Ensembl ID: | ENSFCAG00000030450 | ||
Aliases: | None | ||
Description: | ribosomal protein L32 [Source:HGNC Symbol;Acc:10336] |
Percent Identity: | 74.07 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MAALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHML |
.AALRPL.KPKIVKKRT.K.I.HQSD.YVK.K..W.KPRG.DNRV.RRFKGQILMPNIGY.S.KKTK.ML | |
Retrocopy | LAALRPLGKPKIVKKRTQKLIWHQSD*YVKVKCKWWKPRGADNRVHRRFKGQILMPNIGYRSDKKTKSML |
Parental | PSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE |
PSGF.KFLV.N.KELEV.L...K.YCAEI....SSKN.K..VER.AQ.AI.VTNPNARL..EENE | |
Retrocopy | PSGFWKFLVYNAKELEVPLKSSKPYCAEIVYGISSKNHKVLVERGAQPAIGVTNPNARLLREENE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 27 .55 RPM |
SRP017611_kidney | 0 .00 RPM | 135 .83 RPM |
SRP017611_liver | 0 .00 RPM | 69 .75 RPM |