RetrogeneDB ID: | retro_fcat_1702 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | E2:16276187..16276707(-) | ||
Located in intron of: | ENSFCAG00000024340 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAQ | ||
Ensembl ID: | ENSFCAG00000007854 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide [Source:HGNC Symbol;Acc:12854] |
Percent Identity: | 72.16 % |
Parental protein coverage: | 70.2 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MEKTELIQKAKL-AEQAERYDDMATCMKAVTEQGAELSNEERNLLSVAYKNVVG-GRRSAWRVISSIEQK |
MEK...IQK.KL.A.QA..Y.D.A.CMKA.T.QGAEL.N.E.NLLSV.Y.N.V..G.RS.WRVI.S..QK | |
Retrocopy | MEKL*IIQKVKL>AGQAKHYSDIAICMKAMTQQGAELCNKEHNLLSVSYENMVR<GCRSMWRVIWSSDQK |
Parental | TDTSDKKLQLIKDYREKVESELRSICTTVLELLDKYLIANATN-PESKVFYLKMKGDYFRYLAEVACGDD |
TDTSDKKLQLIKDY.EKVES.LRSICT.VLELLD.YL.A.ATN...SKV.Y.KMKGDYFRYLAEVA.G.. | |
Retrocopy | TDTSDKKLQLIKDYWEKVESKLRSICTMVLELLDNYLTAYATN>IKSKVSYQKMKGDYFRYLAEVAYGVY |
Parental | RKQTIDNSQGAYQEAFDISKKEMQP-THPIRLGLAL |
.KQ.IDNSQGAYQEAFDISKKEMQP...P.R.G..L | |
Retrocopy | *KQMIDNSQGAYQEAFDISKKEMQPIPNPPRAGSQL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .46 RPM | 306 .21 RPM |
SRP017611_kidney | 0 .00 RPM | 138 .82 RPM |
SRP017611_liver | 0 .10 RPM | 48 .32 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000004925 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000015359 | 4 retrocopies | |
Felis catus | ENSFCAG00000007854 | 2 retrocopies |
retro_fcat_1702 , retro_fcat_771,
|
Felis catus | ENSFCAG00000011368 | 1 retrocopy | |
Felis catus | ENSFCAG00000032017 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000005383 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000014740 | 1 retrocopy | |
Mus musculus | ENSMUSG00000076432 | 10 retrocopies | |
Nomascus leucogenys | ENSNLEG00000013534 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000010482 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000000547 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000008104 | 5 retrocopies | |
Sorex araneus | ENSSARG00000012476 | 4 retrocopies | |
Tursiops truncatus | ENSTTRG00000000871 | 4 retrocopies |