RetrogeneDB ID: | retro_fcat_1706 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | E2:19741622..19742441(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HCCS | ||
Ensembl ID: | ENSFCAG00000022393 | ||
Aliases: | None | ||
Description: | holocytochrome c synthase [Source:HGNC Symbol;Acc:4837] |
Percent Identity: | 66.55 % |
Parental protein coverage: | 99.26 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | LSASTPAVAVQTSNASDHQTASPPSGCPMHEGKMKGCPVSAEPPEPTCENKTSSVPTHQDRAYEYVECPV |
LSASTP.V.VQTS.ASDH..ASPPSGCPMHEGKMKGCPV....P.....N........QDR..E....PV | |
Retrocopy | LSASTPTVTVQTSHASDHRMASPPSGCPMHEGKMKGCPVQSM*PIL*EQNEPCGCSPGQDRVCESMGSPV |
Parental | TGAVAGSKEDLDPSNLMPPPNQMPAP---DQPFALSTVREESSIPRADSDKKWVYPSEQMFWNAMLRKGW |
TGAVA..KE.LD.....PP..........DQPFAL.TVRE.SSIPRADS..K.VYPSEQM.WNAM.R.GW | |
Retrocopy | TGAVAENKEHLDSHLMPPPDRTLXXXXXTDQPFALFTVREDSSIPRADSENKCVYPSEQMLWNAMVREGW |
Parental | KWKDDDISQRD-MYNIIKIHNQNNEQAWKEILKWEALHAAECPC-GPSLIRFGGKAKEYSPRARIRSWMG |
KWKD...S..D...NII.IHNQNNEQA.KEI.K.EA.HAA..P...PSLIRFGGK.KEYSPRARI.SWMG | |
Retrocopy | KWKDEAMSHKD<QHNIIRIHNQNNEQARKEIQK*EAIHAAKHPS>APSLIRFGGKEKEYSPRARIHSWMG |
Parental | YELPFDRHDWIINRCGTEVRYVIDYYDGGEVNQDYQFTILDVRPALDSFSAVWDRMKVAWWRWTS |
Y.LPFDRHDW.I..CG.EVR.VI.Y.DGGEV.QDYQFT.LD.RPALD..S...DRM..AWWRWTS | |
Retrocopy | YKLPFDRHDWNIHPCGPEVR*VIGYCDGGEVKQDYQFTTLDARPALDPLS*MGDRMEAAWWRWTS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 21 .92 RPM |
SRP017611_kidney | 0 .00 RPM | 19 .58 RPM |
SRP017611_liver | 0 .00 RPM | 10 .31 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Felis catus | ENSFCAG00000022393 | 1 retrocopy |
retro_fcat_1706 ,
|
Myotis lucifugus | ENSMLUG00000003569 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000014037 | 6 retrocopies | |
Tupaia belangeri | ENSTBEG00000002670 | 1 retrocopy |