RetrogeneDB ID: | retro_fcat_171 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:124181046..124181361(+) | ||
Located in intron of: | ENSFCAG00000008181 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000005639 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 66.67 % |
Parental protein coverage: | 76.64 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | KARNSFRYNGLIHRKTVGVEPAADGKGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKY |
.A.NSF.YNGL...KT.G..P.A..K.V..VMKRRS.Q.KP.TSY..T.INKNA.ATLSSIRH.IRKN.. | |
Retrocopy | QACNSFHYNGLVYHKTAGMDPEAYSKNVMMVMKRRSDQ*KPTTSYMHTHINKNALATLSSIRHRIRKNMD |
Parental | RPDLRMAAIRRASAILRSQKPVMVKRRRARPTKSS |
.P.L.MA.I.RASAIL.SQKP.MVKR..A.PTKSS | |
Retrocopy | HPGLFMASICRASAILHSQKPMMVKRNQACPTKSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 25 .02 RPM |
SRP017611_kidney | 0 .00 RPM | 106 .97 RPM |
SRP017611_liver | 0 .00 RPM | 65 .20 RPM |