RetrogeneDB ID: | retro_fcat_1724 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | E3:15361375..15361731(+) | ||
Located in intron of: | ENSFCAG00000024042 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS20 | ||
Ensembl ID: | ENSFCAG00000029233 | ||
Aliases: | None | ||
Description: | ribosomal protein S20 [Source:HGNC Symbol;Acc:10405] |
Percent Identity: | 69.67 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | MAFKDTG-KTPVEPEVAIHRIRITLTS-RNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRK- |
MA.KD.G.K.PVE.EV.IHRIRITLTS..N.KSLE...A.LIRGAKEKNLKVKG.V....KTLRITTRK. | |
Retrocopy | MASKDMG<KIPVEAEVVIHRIRITLTS>ANGKSLENL*ANLIRGAKEKNLKVKGSVWKSSKTLRITTRK< |
Parental | TPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA |
T..GEG.KTWD.FQMRIHK.L.DL.SPSE.VK.I.SIS.E.G...E.T.A.A | |
Retrocopy | TSSGEGTKTWDCFQMRIHK*LTDLYSPSETVK*IDSISTERGIKAETTNARA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 55 .09 RPM |
SRP017611_kidney | 0 .00 RPM | 171 .18 RPM |
SRP017611_liver | 0 .00 RPM | 76 .53 RPM |