RetrogeneDB ID: | retro_fcat_1757 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | F1:48413360..48413855(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS10 | ||
Ensembl ID: | ENSFCAG00000015355 | ||
Aliases: | None | ||
Description: | ribosomal protein S10 [Source:HGNC Symbol;Acc:10383] |
Percent Identity: | 70.3 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 0 |
Parental | MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWY |
M..P.KN.IAIYELLFKE.VMVA.KD.H.PK..EL.D.NVPNL..MKA.Q.LK.RGYVKEQFAWRH.Y.. | |
Retrocopy | MWVPRKN*IAIYELLFKERVMVARKDAHVPKYLELGDQNVPNLYIMKALQCLK*RGYVKEQFAWRHYY** |
Parental | LTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARLTRGEADRDTYRRSAVPPGADKKA |
L..E.IQ...DYLHL.PE..PATL..S.PET..P..KGLEGE.P.RLT..EADRDTYR.SAVPP.A.KKA | |
Retrocopy | LPSESIQCRHDYLHLSPEMEPATLCHSCPETCKPWLKGLEGELPVRLT*READRDTYRGSAVPPDAYKKA |
Parental | EAGAGSATEFQFRGGFGRGRGQPPQ |
.A.AGSATEF.FRG.FGR..GQPPQ | |
Retrocopy | AALAGSATEFEFRGRFGRVCGQPPQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 78 .16 RPM |
SRP017611_kidney | 0 .00 RPM | 226 .11 RPM |
SRP017611_liver | 0 .00 RPM | 126 .16 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001047 | 4 retrocopies | |
Canis familiaris | ENSCAFG00000001214 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000015250 | 4 retrocopies | |
Felis catus | ENSFCAG00000015355 | 3 retrocopies |
retro_fcat_1443, retro_fcat_1681, retro_fcat_1757 ,
|
Latimeria chalumnae | ENSLACG00000017219 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000008539 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000000267 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000013929 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000003117 | 3 retrocopies | |
Mus musculus | ENSMUSG00000052146 | 9 retrocopies | |
Otolemur garnettii | ENSOGAG00000001365 | 5 retrocopies | |
Pongo abelii | ENSPPYG00000016516 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000000490 | 4 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000000731 | 3 retrocopies |