RetrogeneDB ID: | retro_fcat_1773 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | F1:17865480..17866088(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSFCAG00000012041 | ||
Aliases: | RPS4, RPS4X | ||
Description: | 40S ribosomal protein S4, X isoform [Source:UniProtKB/Swiss-Prot;Acc:P62705] |
Percent Identity: | 67.31 % |
Parental protein coverage: | 77.57 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | MARGPKKHLKRVAAPKHWML-DKLTGVFAPRPSTGPHKLRECLPLIIFL-RNRLKYALTGDEVKKICMQR |
MA.GPKKHLK..A..K.WML...L..VF...PST.PHKLRECL.LII...RN.LKYALTG.E.KKICMQ. | |
Retrocopy | MAPGPKKHLKCAAVLKQWML<NNLISVFVAHPSTRPHKLRECLLLIILQ<RNTLKYALTGEEIKKICMQQ |
Parental | FIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTK-GRFAVHRITPEEAKYKLCKVRKIFVGTKGIP |
..K.DGKV.TD.TY..G..DV..IDKT..N..LI.DTK.G.FAVH.ITP.EAK.KLC.VRK.F.GTK.IP | |
Retrocopy | SNKVDGKVQTDTTYLTGLIDVMGIDKTEKNSYLICDTK<GSFAVHYITP*EAK*KLCEVRKVFLGTKEIP |
Parental | HLVTHDARTIRYPDP-LIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGS |
HLVTHDA.T...PD..L.KVN.TIQIDLETG.ITDFIKFDTG.L..V..GAN..RIGV.T..ERHP.S | |
Retrocopy | HLVTHDAHTSCPPDS<LTKVNETIQIDLETGQITDFIKFDTGDLYIVIRGANM*RIGVTTDEERHPTS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 209 .23 RPM |
SRP017611_kidney | 0 .00 RPM | 796 .64 RPM |
SRP017611_liver | 0 .00 RPM | 316 .51 RPM |