RetrogeneDB ID: | retro_fcat_1777 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | F1:20749618..20749903(-) | ||
Located in intron of: | ENSFCAG00000028522 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000024367 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 88.42 % |
Parental protein coverage: | 71.43 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MQLFVRAQELHTLEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGTPLEDEATLGQCGVEALTTLEVAGR |
.QLFV.AQELHTLEV.GQETVAQIK.HVASLEG.APEDQVVLLAGTPLEDEATLGQCG.EALTTLEVA.R | |
Retrocopy | LQLFVHAQELHTLEVIGQETVAQIKVHVASLEGVAPEDQVVLLAGTPLEDEATLGQCGEEALTTLEVACR |
Parental | MLGGKVHGSLARAGKVRGQTPKVAK |
.L.GKVHGSL..AGKVRGQTPKVAK | |
Retrocopy | RLEGKVHGSLTCAGKVRGQTPKVAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 50 .61 RPM |
SRP017611_kidney | 0 .00 RPM | 156 .75 RPM |
SRP017611_liver | 0 .00 RPM | 85 .02 RPM |