RetrogeneDB ID: | retro_fcat_1782 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | F1:31502326..31502578(-) | ||
Located in intron of: | ENSFCAG00000025437 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GOLT1B | ||
Ensembl ID: | ENSFCAG00000028655 | ||
Aliases: | None | ||
Description: | golgi transport 1B [Source:HGNC Symbol;Acc:20175] |
Percent Identity: | 81.4 % |
Parental protein coverage: | 65.35 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | FRFFFQKHKMKATGFFLGGVFVVLIGWPL-IGMIFEIYGF-FL-LFRGFFPVVIGFIRRVPVLGSLLNLP |
FR.FFQKH.MKATGFFLGG.FVVL.GWP...GMIFEIY.F.FL..FRGFFP.V.GFIRRVPV.G.LLNL. | |
Retrocopy | FRVFFQKHNMKATGFFLGGIFVVLVGWPF>VGMIFEIY*FCFL<VFRGFFPMVTGFIRRVPVPGFLLNLH |
Parental | GIRSFVDKVGESNNMV |
GIRSFVDKVGESNNMV | |
Retrocopy | GIRSFVDKVGESNNMV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 22 .50 RPM |
SRP017611_kidney | 0 .10 RPM | 14 .12 RPM |
SRP017611_liver | 0 .10 RPM | 5 .16 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016231 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000012256 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000013576 | 2 retrocopies | |
Felis catus | ENSFCAG00000028655 | 1 retrocopy |
retro_fcat_1782 ,
|
Oryctolagus cuniculus | ENSOCUG00000008797 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000004756 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000006352 | 1 retrocopy |