RetrogeneDB ID: | retro_fcat_1813 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | F2:40579101..40579603(+) | ||
Located in intron of: | ENSFCAG00000015513 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMB6 | ||
Ensembl ID: | ENSFCAG00000008036 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) subunit, beta type, 6 [Source:HGNC Symbol;Acc:9543] |
Percent Identity: | 90.48 % |
Parental protein coverage: | 69.87 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MAATLVSAGGAGSVPAWGPEAIAPDWESREVSTGTTIMAVQFEGGVVLGADSRTTTGSYIANRVTDKLTP |
MAATL.S.GGAGSVPAWGPEAIAPDWES.EVSTGTTIMA.QFEGGVVL.A.SRTTTGSYIAN.VTDKLTP | |
Retrocopy | MAATLESGGGAGSVPAWGPEAIAPDWESQEVSTGTTIMAIQFEGGVVLEAGSRTTTGSYIAN*VTDKLTP |
Parental | IHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQ |
IHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEP.L..TAASLFKEMCY.YRE.LMAGII.AGWD.Q | |
Retrocopy | IHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPLLLYTAASLFKEMCYLYREELMAGIITAGWDLQ |
Parental | EGGQVYSVPM-GGMMVRQSFAIGGSGSS |
EGGQVYSVP..GGMMVRQSFAIGGSGSS | |
Retrocopy | EGGQVYSVPL>GGMMVRQSFAIGGSGSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 14 .12 RPM |
SRP017611_kidney | 0 .00 RPM | 27 .10 RPM |
SRP017611_liver | 0 .00 RPM | 16 .38 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Felis catus | ENSFCAG00000008036 | 2 retrocopies |
retro_fcat_1813 , retro_fcat_1995,
|
Loxodonta africana | ENSLAFG00000012859 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000010676 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000005554 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000019551 | 1 retrocopy | |
Sorex araneus | ENSSARG00000006615 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000014871 | 1 retrocopy |