RetrogeneDB ID: | retro_fcat_1816 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | F2:45534764..45535168(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CYB5B | ||
Ensembl ID: | ENSFCAG00000024541 | ||
Aliases: | None | ||
Description: | cytochrome b5 type B (outer mitochondrial membrane) [Source:HGNC Symbol;Acc:24374] |
Percent Identity: | 80.88 % |
Parental protein coverage: | 92.47 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | KGQGVETSVTYYRLEEVAKHNSMKEIWLVIHGRVYDITRFLNEHPGGEEVLMEQAGADASESFEDVGHSS |
K..G......YY.LEE.AKHNSMKEIWLVIH.RVYDIT.FLN.HPGGEEVL.EQAGAD.S.SFEDVGHSS | |
Retrocopy | KARGQDLYQLYY*LEEAAKHNSMKEIWLVIHRRVYDITHFLNKHPGGEEVLQEQAGADTSKSFEDVGHSS |
Parental | DAREMLKQYYIGDVHPNDLKPESGSKDPSKDA-TCKSCWSYWILPIIGAIVLGFLYRYYTSESKSS |
DA.EMLK.YYIGDVHP.DLKPESG.KDPSKD...CKSCWSYWILPIIGAIVLGFLY.YY.SE.KSS | |
Retrocopy | DATEMLK*YYIGDVHPSDLKPESGNKDPSKDT<LCKSCWSYWILPIIGAIVLGFLYCYYMSEKKSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 88 .37 RPM |
SRP017611_kidney | 0 .00 RPM | 75 .85 RPM |
SRP017611_liver | 0 .00 RPM | 90 .07 RPM |