RetrogeneDB ID: | retro_fcat_1824 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | F2:54988381..54988657(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000013142 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71.88 % |
Parental protein coverage: | 68.57 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | HALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRK |
HALV.GID.YP.KV....G.....KRSKI.SFVKVYNYNHLMPTR..VDI.LDKTV.NKDVFR..ALK.K | |
Retrocopy | HALVSGIDCYPCKVISTIGR----KRSKIESFVKVYNYNHLMPTRHPVDILLDKTVSNKDVFRNSALKCK |
Parental | ARREAKVKFEERYKTGKNKWFFQKLR |
A...AKVKF.E.YKT.KNKWFFQKL. | |
Retrocopy | A*VGAKVKFKEIYKTCKNKWFFQKLQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 52 .22 RPM |
SRP017611_kidney | 0 .00 RPM | 228 .38 RPM |
SRP017611_liver | 0 .00 RPM | 104 .73 RPM |