RetrogeneDB ID: | retro_fcat_1831 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | F2:803102..803430(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TUSC2 | ||
Ensembl ID: | ENSFCAG00000031595 | ||
Aliases: | None | ||
Description: | tumor suppressor candidate 2 [Source:HGNC Symbol;Acc:17034] |
Percent Identity: | 69.57 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MGASGSKAR-GLWPF--ASGAGG-GGPESAVAEQALVRPRGRVVPPFVFTRRGSMFYDEDGD-LAHEFYE |
.G..GSKAR.GL.P...A.G.GG.G.P.SAVAEQALVRPRGRV..PF.F.R.GS.F.DE.G...AHE... | |
Retrocopy | LGTGGSKAR>GLRPLASAAGGGG>GAPGSAVAEQALVRPRGRVRSPFAFRRHGSKFCDEEGE<TAHE--- |
Parental | ETIVTKNGQKRAKLRRVHKNLIPQGIVKLDPPRIHVDFPVILYEV |
ET.VT.NGQKRAK.RRV.KNL.PQG.VKLDPPR.HVDFP.ILYEV | |
Retrocopy | ETVVTRNGQKRAKPRRVPKNLLPQGLVKLDPPRVHVDFPGILYEV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 6 .20 RPM |
SRP017611_kidney | 0 .00 RPM | 2 .27 RPM |
SRP017611_liver | 0 .00 RPM | 0 .91 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dipodomys ordii | ENSDORG00000007859 | 2 retrocopies | |
Felis catus | ENSFCAG00000031595 | 1 retrocopy |
retro_fcat_1831 ,
|
Myotis lucifugus | ENSMLUG00000002499 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000008080 | 3 retrocopies | |
Tarsius syrichta | ENSTSYG00000010483 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000007903 | 1 retrocopy |