RetrogeneDB ID: | retro_fcat_1848 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | F2:45800692..45801220(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL18A | ||
Ensembl ID: | ENSFCAG00000007518 | ||
Aliases: | None | ||
Description: | ribosomal protein L18a [Source:HGNC Symbol;Acc:10311] |
Percent Identity: | 67.78 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | MKASGTLREYKVVGRCLPTPKCRTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKS-SGEIVYCGQVFE |
.KA.G.L..YKVVG..LP.PKC.T.PLYR..IFAPNHVVAK.RFW.FVSQLKKMKKS..GEIV.CGQV.E | |
Retrocopy | LKAWGML*DYKVVGCLLPIPKCHTLPLYRL*IFAPNHVVAKFRFWCFVSQLKKMKKS<LGEIVHCGQVLE |
Parental | KSPLRVKNFGIWLRYDSRSGTHNMY-REYR-DLTTAGAVTQCYRDMGARHR-ARAHSIQIMKVEEIAASK |
KSPLRV..F..WL..DSR.G.HN.Y.R.YR...T.AGAVTQ.Y.D.G.R....RAH.IQI.KVEEIA.SK | |
Retrocopy | KSPLRVRDFSTWLCSDSRRGSHNLY<RQYR<EPTAAGAVTQRY*DTGGRSTPRRAHWIQITKVEEIAPSK |
Parental | CRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF |
C..P...QF.DSKI.FPLPH.VLR.QHKP..T.KRPN..F | |
Retrocopy | CHQPSAQQFRDSKIEFPLPHWVLRPQHKPCCTAKRPNMYF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 25 .48 RPM |
SRP017611_kidney | 0 .00 RPM | 103 .88 RPM |
SRP017611_liver | 0 .00 RPM | 56 .91 RPM |