>retro_fcat_1865
GTGGCTCTCCTGGGTTGGGTCGGCCCGGTGGCGTGCACCGCCATCCCGCAGTGGCGCGTGAGCTCGCAGGAGGGCGACAA
CAGCGTCACCGGCCAGGCGAGGTACAAGGGGCTGTGGATGGACTGCGTCACGCAGGGCACCGGCGTGTTGAGCTGCAGGA
TCGGCCACACAGGCCACCTGATGGCGGCGTCCCGGGGGCTGGGCTTCCTGGCCACGCTCGGACACGATGGGCACGAGGTG
ORF - retro_fcat_1865 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
53.66 % |
Parental protein coverage: |
50.93 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | LALLGWVGLVAATAIPQWQMSSYAGDNIITAQAMYKGLWMDCVTQRGDDKVKKARIAMTGGIVFIVAGLA |
| .ALLGWVG.VA.TAIPQW..SS..GDN..T.QA.YKGLWMDCVTQ.....V...RI..TG.......GL. |
Retrocopy | VALLGWVGPVACTAIPQWRVSSQEGDNSVTGQARYKGLWMDCVTQ--GTGVLSCRIGHTGHLMAASRGLG |
|
Parental | ALVACSWYGHQI |
| .L......GH.. |
Retrocopy | FLATLGHDGHEV |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .11 RPM |
0 .00 RPM |
SRP017611_kidney |
0 .00 RPM |
5 .05 RPM |
SRP017611_liver |
0 .00 RPM |
0 .20 RPM |
Felis catus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_fcat_1865 retrocopy.
Felis catus was not studied using FANTOM5 data.
retro_fcat_1865 was not experimentally validated.
Retrocopy orthology:
Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.