RetrogeneDB ID: | retro_fcat_1869 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | JH408484.1:1149674..1150249(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | OSTF1 | ||
Ensembl ID: | ENSFCAG00000022374 | ||
Aliases: | None | ||
Description: | osteoclast stimulating factor 1 [Source:HGNC Symbol;Acc:8510] |
Percent Identity: | 73.98 % |
Parental protein coverage: | 94.15 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | KPPPKPVKPGQVKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTN-WWKGTSKGKTGLIPSNYVAEQAE |
KPPPKPVKPGQVK..R.LYT.EP.TPDEL.FEEGDI.Y.TD...T..W.KGTSKG...LIP.NYVA...E | |
Retrocopy | KPPPKPVKPGQVKALRPLYTLEP*TPDELCFEEGDITYLTDVVPTG<W-KGTSKGRSRLIPGNYVAKLTE |
Parental | SIDNPLHEAA-KRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLG |
SID.PL.E.A.KRGNLS.L.ECLDN.VGVNGLDKAGSTAL.WACH.GHKD...MLF.QP.IELNQQNKLG | |
Retrocopy | SIDSPLYEIA>KRGNLSCLKECLDNWVGVNGLDKAGSTALCWACHRGHKDNRGMLFPQPKIELNQQNKLG |
Parental | DTALHAAAWKGYADIVHLLLE-KGARTDLRNNEKKLALDMATNAACASLLKKKQGT |
DTAL.AA.WKG.AD.V.LLLE.K..RTDLRN.EKK..LD...NAACA.LLK.KQGT | |
Retrocopy | DTALQAATWKGSADNVQLLLE<KSTRTDLRNHEKKHVLDVTPNAACACLLKMKQGT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 9 .18 RPM |
SRP017611_kidney | 0 .00 RPM | 10 .51 RPM |
SRP017611_liver | 0 .00 RPM | 5 .96 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000012808 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000007226 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000002933 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000008320 | 2 retrocopies | |
Felis catus | ENSFCAG00000022374 | 1 retrocopy |
retro_fcat_1869 ,
|
Homo sapiens | ENSG00000134996 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000011920 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000010401 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001854 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000002603 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000019300 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000021031 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000012156 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000005273 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000003081 | 1 retrocopy |