RetrogeneDB ID: | retro_fcat_1875 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | JH408686.1:1047996..1048230(-) | ||
Located in intron of: | ENSFCAG00000029060 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CKS2 | ||
Ensembl ID: | ENSFCAG00000022286 | ||
Aliases: | None | ||
Description: | CDC28 protein kinase regulatory subunit 2 [Source:HGNC Symbol;Acc:2000] |
Percent Identity: | 67.5 % |
Parental protein coverage: | 98.73 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | AHKQIYYSD-KYFDEHYEYRHVMLPRELSKQVPKTHLMSEEEWRRLGVQQSLGWVHYMIHEPEPHILLFR |
AHKQIY....KYF..HYEY...MLPRELS..V.KTHLMSE..WRR.GVQQS.GWVH..IHE.E.HI.L.. | |
Retrocopy | AHKQIYQLE>KYFNKHYEYQRFMLPRELS*PVSKTHLMSEDQWRRPGVQQSPGWVHHRIHESESHIRLLN |
Parental | R-PLPKEQQK |
..PLPK.QQK | |
Retrocopy | N<PLPKYQQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 8 .84 RPM |
SRP017611_kidney | 0 .00 RPM | 13 .09 RPM |
SRP017611_liver | 0 .00 RPM | 11 .02 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000007792 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000009427 | 8 retrocopies | |
Erinaceus europaeus | ENSEEUG00000004384 | 7 retrocopies | |
Felis catus | ENSFCAG00000001347 | 1 retrocopy | |
Felis catus | ENSFCAG00000022286 | 1 retrocopy |
retro_fcat_1875 ,
|
Homo sapiens | ENSG00000123975 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000012534 | 1 retrocopy | |
Mus musculus | ENSMUSG00000062248 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000008729 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000028843 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000007583 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000025843 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000021093 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000011011 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000014130 | 5 retrocopies | |
Sorex araneus | ENSSARG00000002443 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000021161 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000000048 | 7 retrocopies |