RetrogeneDB ID: | retro_fcat_1877 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | JH408731.1:463071..463458(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000027856 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL11 | ||
Ensembl ID: | ENSFCAG00000028651 | ||
Aliases: | None | ||
Description: | ribosomal protein L11 [Source:HGNC Symbol;Acc:10301] |
Percent Identity: | 75.19 % |
Parental protein coverage: | 73.03 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | CLNICVGESGDRLTRAAKVLEQLTG-QTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKV |
C.NICV.ESGDRL..A.KVLEQL...QTP.FSKARYTVRSFGIRRNEKIAV.CTV.GA.AEEI.EKG.K. | |
Retrocopy | CHNICV*ESGDRLIPATKVLEQLKA<QTPAFSKARYTVRSFGIRRNEKIAVYCTVHGANAEEIPEKGVKA |
Parental | REYELR-KNNFSDTGNFG-FGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGC |
..YELR.KNNFSD.GNFG.FGIQEHIDLGIKYDPS..I..L..YVVLGR.G...ADKK..T.C | |
Retrocopy | *VYELR<KNNFSDAGNFG<FGIQEHIDLGIKYDPSTDIHSLGSYVVLGRLGVNTADKK*GTSC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 81 .49 RPM |
SRP017611_kidney | 0 .00 RPM | 409 .04 RPM |
SRP017611_liver | 0 .00 RPM | 208 .75 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000005058 | 1 retrocopy | |
Ailuropoda melanoleuca | ENSAMEG00000009704 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000013232 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000008432 | 2 retrocopies | |
Equus caballus | ENSECAG00000021136 | 3 retrocopies | |
Felis catus | ENSFCAG00000028651 | 2 retrocopies |
retro_fcat_1069, retro_fcat_1877 ,
|
Gorilla gorilla | ENSGGOG00000014628 | 6 retrocopies | |
Macropus eugenii | ENSMEUG00000013738 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000008868 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000002445 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000012828 | 1 retrocopy | |
Mus musculus | ENSMUSG00000059291 | 3 retrocopies | |
Ornithorhynchus anatinus | ENSOANG00000000321 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000032741 | 6 retrocopies | |
Rattus norvegicus | ENSRNOG00000026260 | 9 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000006767 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000016115 | 4 retrocopies |