RetrogeneDB ID: | retro_fcat_1914 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | X:46333736..46334160(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPIA | ||
Ensembl ID: | ENSFCAG00000009159 | ||
Aliases: | PPIA, MT-ND1, MTND1, NADH1, ND1, cypA | ||
Description: | Peptidyl-prolyl cis-trans isomerase A [Source:UniProtKB/Swiss-Prot;Acc:Q8HXS3] |
Percent Identity: | 82.64 % |
Parental protein coverage: | 92.21 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | QLFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFDDENFILKH |
.LF.DKVPKTAE.F.ALSTGEK.FGYK.SCF.RIIPGFMCQG..FT.HN.TGGKSIYGEKFDDENFIL.H | |
Retrocopy | ELFVDKVPKTAEHFHALSTGEKIFGYKASCFYRIIPGFMCQGSNFTHHNDTGGKSIYGEKFDDENFILNH |
Parental | TGPGILSMANAGPNTNGSQF-FICTAKTEWLDGKHVVFGMVKEGMNIVE-AMERFGSRNGKTSKKITIAD |
TGPG.LSMAN.GPN.N.S.F.FIC.AKT.WLDGKHVVFG.VKEGMNI.E.AME..GSRNGKTSKKITIAD | |
Retrocopy | TGPGTLSMANVGPNMNSS*F<FICMAKTDWLDGKHVVFGKVKEGMNILE<AMEHLGSRNGKTSKKITIAD |
Parental | CGQI |
CGQI | |
Retrocopy | CGQI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 129 .35 RPM |
SRP017611_kidney | 0 .00 RPM | 193 .34 RPM |
SRP017611_liver | 0 .00 RPM | 71 .07 RPM |