RetrogeneDB ID: | retro_fcat_1925 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | X:64018392..64018928(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CHTOP | ||
Ensembl ID: | ENSFCAG00000002740 | ||
Aliases: | None | ||
Description: | chromatin target of PRMT1 [Source:HGNC Symbol;Acc:24511] |
Percent Identity: | 68.89 % |
Parental protein coverage: | 71.08 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | QKSLKQRLGKSNIQARLGRPIGTLARGAIGGRGLPIIQRGLPRGGLRGGRATRTLLRGG--MSLRGQNLL |
QK.L.Q.L.KSNIQA.LGR.IG.LARG.IG...LPIIQRG.PRGGL.GG.AT...L.GG..MSL.G.NLL | |
Retrocopy | QKTLNQHLDKSNIQAWLGRHIGALARGGIGEQSLPIIQRGVPRGGLCGGLATEPCLVGGWGMSL*G*NLL |
Parental | R-GGRAVAPRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGGFGGRGRGRGRGRGALTR |
..GG.AVAP.MGLRR.GV.G.G.PGRGGLG.GAMG.G.IG.RG.GM...GRG.F...G.G.G.GRG.L.. | |
Retrocopy | Q<GG*AVAPQMGLRRCGVQGHGSPGRGGLGHGAMGHGEIGYRGQGMMSWGRGSFEC*GGGCGPGRGTLIH |
Parental | PVLTKEQLDNQLDAYMSKTKGHLDAELDAYMAQTDPETND |
PVLT.EQLDNQ.D.YM.K.KGHLDA.LDAYMAQ.DP.TND | |
Retrocopy | PVLTWEQLDNQWDTYMLKMKGHLDAKLDAYMAQKDPKTND |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 57 .16 RPM |
SRP017611_kidney | 0 .00 RPM | 47 .41 RPM |
SRP017611_liver | 0 .00 RPM | 40 .64 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000013518 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000010383 | 3 retrocopies | |
Felis catus | ENSFCAG00000002740 | 1 retrocopy |
retro_fcat_1925 ,
|
Myotis lucifugus | ENSMLUG00000016098 | 2 retrocopies | |
Mus musculus | ENSMUSG00000001017 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000012760 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000000660 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012442 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000010259 | 1 retrocopy |