RetrogeneDB ID: | retro_fcat_1936 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | X:87118883..87119314(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NCBP2 | ||
Ensembl ID: | ENSFCAG00000029865 | ||
Aliases: | None | ||
Description: | nuclear cap binding protein subunit 2, 20kDa [Source:HGNC Symbol;Acc:7659] |
Percent Identity: | 70.34 % |
Parental protein coverage: | 92.31 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | LKALRSDSYVELSQYRDQHFRGDNEEQEKLLKKSCTLYVG-NLSFYTTEEQIYELFSKSGDIKKIIMGLD |
L..L.SD...ELS.YRDQ.F.G.N.EQEKLLK.S.TLYVG..LSFY.TEEQIYELFS..GD.K...MGLD | |
Retrocopy | LRLLCSDPSLELSEYRDQQFGGNNDEQEKLLKESFTLYVG<DLSFYNTEEQIYELFSRCGDVKNMFMGLD |
Parental | KMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGRQYGRGRSGGQVRDEYRQDYDA |
K.KK.ACGFCFVEY..R..AENAM...NGTRLDDRIIRTDWD.GF.EGRQYG..R.G.QVRDE...D..A | |
Retrocopy | KIKKMACGFCFVEYHNRFEAENAMWCLNGTRLDDRIIRTDWDLGFREGRQYGHPRRGSQVRDEFHDDFNA |
Parental | GRGGY |
GRGG. | |
Retrocopy | GRGGF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 27 .66 RPM |
SRP017611_kidney | 0 .00 RPM | 25 .66 RPM |
SRP017611_liver | 0 .10 RPM | 14 .15 RPM |