RetrogeneDB ID: | retro_fcat_1941 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | X:102579580..102579888(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000011782 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.38 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | MAQFVRNLAEKAPALVNAAVTYSKPRLAT-FWHYAKVELVPPTPAEIPTAIQSL-KKIVKSAQTGSFKQL |
MA.FV.NL.EKA..LVNAAVTY..P.LAT.FWHYAKVE.V..TPA.IP.AIQSL.....KSAQTGSF.QL | |
Retrocopy | MA*FVCNLEEKALMLVNAAVTYV*P*LAT>FWHYAKVEMVHLTPADIPAAIQSL>XXXIKSAQTGSFEQL |
Parental | TVKEALLNGLVATEVWMWFYVGEIIGKRGIIGYDV |
TVK...L..LVATEVWMWFYV.EI.GK.GIIGY.V | |
Retrocopy | TVKLC*L-VLVATEVWMWFYVSEIMGKCGIIGYNV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 30 .41 RPM |
SRP017611_kidney | 0 .00 RPM | 85 .33 RPM |
SRP017611_liver | 0 .00 RPM | 24 .36 RPM |