RetrogeneDB ID: | retro_fcat_1948 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | X:109351641..109351920(+) | ||
Located in intron of: | ENSFCAG00000006864 | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000006866 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS26 | ||
Ensembl ID: | ENSFCAG00000013977 | ||
Aliases: | None | ||
Description: | ribosomal protein S26 [Source:HGNC Symbol;Acc:10414] |
Percent Identity: | 76.34 % |
Parental protein coverage: | 80.87 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | CTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHSKVVRNRSREAR |
CTNC..CVPKDKAI.KF...N..EAAA.RDISEAS.F.AYVLPKLYV.LHYCVS.AIH.K.V...SREA. | |
Retrocopy | CTNCTHCVPKDKAIRKFAFWNTGEAAAYRDISEASIFEAYVLPKLYVQLHYCVSRAIHGKPVQDHSREAP |
Parental | KDRTPPPRFRPAGAAPRPPPKPM |
KDRTPPPR.RP.GAAPRPPPKP. | |
Retrocopy | KDRTPPPRSRPVGAAPRPPPKPV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 39 .94 RPM |
SRP017611_kidney | 0 .00 RPM | 119 .55 RPM |
SRP017611_liver | 0 .00 RPM | 78 .95 RPM |