RetrogeneDB ID: | retro_fcat_1949 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | X:113756812..113757088(+) | ||
Located in intron of: | ENSFCAG00000012377 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS26 | ||
Ensembl ID: | ENSFCAG00000013977 | ||
Aliases: | None | ||
Description: | ribosomal protein S26 [Source:HGNC Symbol;Acc:10414] |
Percent Identity: | 78.26 % |
Parental protein coverage: | 80. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | TNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHSKVVRNRSREARK |
..C..CVPKDKAI.KFV..N.VEAAAVRDISEA.VF.AYVL.KLYV.LHYCVS.AIH.KVVR.RSREA.K | |
Retrocopy | SHCTHCVPKDKAITKFVMCNTVEAAAVRDISEARVFKAYVLLKLYVQLHYCVSSAIHGKVVRDRSREAPK |
Parental | DRTPPPRFRPAGAAPRPPPKPM |
..TPPPR.RP.GAAPRPPPKPM | |
Retrocopy | AQTPPPRSRPVGAAPRPPPKPM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 39 .94 RPM |
SRP017611_kidney | 0 .00 RPM | 119 .55 RPM |
SRP017611_liver | 0 .00 RPM | 78 .95 RPM |