RetrogeneDB ID: | retro_fcat_1958 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | X:123746090..123746518(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GOLGA7 | ||
Ensembl ID: | ENSFCAG00000018740 | ||
Aliases: | None | ||
Description: | golgin A7 [Source:HGNC Symbol;Acc:24876] |
Percent Identity: | 88.19 % |
Parental protein coverage: | 99.31 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | ARPVLAMRPQQAPVSGKVFIQRDYSSGTRCQFQTKFPAELENRIDRQQFEETVRTLNNLYAEAEKLG-GQ |
A.PVL..RPQQ..VS.KVFIQ.DYSSGTRCQFQTKFPAELEN.IDRQQFEETV.TLNNLYAEAE.LG..Q | |
Retrocopy | AHPVLTIRPQQVSVSRKVFIQQDYSSGTRCQFQTKFPAELENLIDRQQFEETVGTLNNLYAEAENLG<SQ |
Parental | SYLEGCLACLTAYTIFLCMETHYEKVLKKVSKYIQEQNEKIYAPQGLLLTDPIERGLRVIEITIYEDRGM |
.YLEGCLACLTAYTIFLCMETHYE.V.KKVSKYIQEQNEKIY.PQGLLLTD.IERGLRVIEITIYEDRGM | |
Retrocopy | TYLEGCLACLTAYTIFLCMETHYERVVKKVSKYIQEQNEKIYTPQGLLLTDHIERGLRVIEITIYEDRGM |
Parental | SSGR |
SSGR | |
Retrocopy | SSGR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .34 RPM | 37 .19 RPM |
SRP017611_kidney | 0 .00 RPM | 14 .84 RPM |
SRP017611_liver | 0 .00 RPM | 12 .64 RPM |