RetrogeneDB ID: | retro_fcat_1960 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | X:125779974..125780637(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNRPB | ||
Ensembl ID: | ENSFCAG00000014447 | ||
Aliases: | None | ||
Description: | small nuclear ribonucleoprotein polypeptides B and B1 [Source:HGNC Symbol;Acc:11153] |
Percent Identity: | 70.87 % |
Parental protein coverage: | 71.34 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 6 |
Parental | FKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGA |
FKAF...MNLI.CDC.EFRKI.PKNSKQAEREEK..LGLVLL.GE.LVSMTV.G..PKDTGIAR..LAGA | |
Retrocopy | FKAFGQLMNLIFCDCEEFRKI*PKNSKQAEREEK*LLGLVLLWGEKLVSMTVDGSTPKDTGIARLSLAGA |
Parental | AGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPP |
A..PGIGRA.GRGIP.GV.MP..P.GLAGPV.G...PSQQV.T.QGRGTVAAA.A.AT....GAPTQY.P | |
Retrocopy | ARDPGIGRALGRGIPTGVLMPYTPVGLAGPV*G---PSQQVTTRQGRGTVAAAGATATVRTGGAPTQYLP |
Parental | GRG-GPP-PPMGRG-APPPGMMGPPPGMRPPMGPPMGI-PPGRGTPMGMPPPGMRPPP-PGM-RAFFDPW |
G.G.GP...PMG.G.APP.G.MGPPP.MR.PMG.PMGI.P.G.GTP.GM.PPGM.PP..PG...AFFDPW | |
Retrocopy | GCG<GPS<TPMG*G<APPAGTMGPPPVMRTPMGSPMGI>PSGQGTPIGMLPPGMQPPS>PGV>EAFFDPW |
Parental | PQSYGSSSTEAWARLPQTCL |
PQSYG..STEAWA......L | |
Retrocopy | PQSYGNCSTEAWAQCSRATL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 15 .04 RPM |
SRP017611_kidney | 0 .00 RPM | 28 .65 RPM |
SRP017611_liver | 0 .00 RPM | 14 .35 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000011353 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000006693 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000020971 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000007896 | 2 retrocopies | |
Erinaceus europaeus | ENSEEUG00000015568 | 3 retrocopies | |
Felis catus | ENSFCAG00000014447 | 2 retrocopies |
retro_fcat_1788, retro_fcat_1960 ,
|
Felis catus | ENSFCAG00000022298 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000016519 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000016951 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000009283 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000009206 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000016149 | 4 retrocopies | |
Ochotona princeps | ENSOPRG00000007459 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000010841 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000017013 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000010040 | 3 retrocopies | |
Tarsius syrichta | ENSTSYG00000014498 | 2 retrocopies |