>retro_fcat_1967
ATGGCCGCGCCCCAAAACGGCATCCCTTCCTTGTCGGAATGCCAGTGCCTCATCTGTCTGGAAATCTTAATCGAGCCCGT
AACTCTGCCTTGTAACCACACACTCTGTAATGAATGTTTCCAGTCAACTATCGAAAAGGCAAGTTTATGCTGTCCTTTCT
GTCGCCGCCGGATCTCTTCGTGGACCCGGTACCATGCCCGAAGAAATTCTCTTGTCAACCAGGAACTGTGGCAGATAATT
CAAAAACACTATCCAGAAGAATGCAGGCTTAGAATGGCTGGGCAGAAATCAGAGGAGATGGTTGATGACTTTAAGCCAGT
TCACTTATTAAGTAAGCCCGGGGAATTGAGAAAAGAATATGAAGAGGAGGTAAGAAAGATGGAGGCAGAGCGACGAGCCA
TTGAAGAAAATGAAGAAAAAATGAGTAAAGAATACATACAGAGATTATTGGCAGAAGAAGAAGAGGAGGAAAGACGGCAG
TCACAAAAAAGGCAGAAAGAGCTGGAGGAACAACTGAAAAGTGATGAAGAACTAGCAAGAAAGCTAAGCTTTAATCTTAA
TTACTGTGACAGAAAGGACTTGGCTTCTCCTTTGAATTCCACAAAACCTGGTACGGTCACAGCCAAGTATCCAAAGAAAA
GTAAGAAGAGAAACACCAACACTGGAGATATTCAGACATACTTCTCACCTAAATTTCAGTTTGGGTCAACATCACGGTCT
GAAGTTGCCCAAGAAAGCAGGAATGTCTCCATGTCCAAGGAAACTGACAATACTGTGGTAAAAAGCCCTGTGTGGCAAGA
TACAGTAAGTGAAGAAGATATGCCAACAGTTTTTCCACAACTATCCATGGACATTAAAGAACAGGCTGCACAGTCTTCAG
TAGAGTCACCTGTACCTCAGTTGCATGACAACGGTAGAGAATGGTGCCTTCAACAAAAAATTAAAATGACACGAAGCAAT
CGTGATAAAGAGTTACATGTCCTAAATAACAAGGGACCTGAAGCCAGAGTTCCCTGCTTTGGAGAAACAGAGAGTGCATG
CACTGTATCAGGTATGACACAGATAATTGAAAGTAACAAAGTTGACACAGAAAGTGAAGACGATTGCCTACTGATCAGTG
AAGATATTTCCAAAGGAAAAAACCAGGAATCTTTGTTTGAAGCAGTCACGGATCCATGCATTTCTGCAAAAAGAAAGAAA
ATGTTCCCCAAAGCTTCCACAGCTCCAGAGGAAACAGAAATCAACGTTACCGAGAATGTCATAGATTTGGAATGCTTGCC
TTCTGAGAGAAATAAACAGGAAGAGCAGGACTGGTTTTTTGCATATCAGCTTCAGCAAGAAATAGACAAAGAACAAATGA
AACCCAACCGGCAAAAAGGGTCCCCAGATGAATATCAGCTACGTCCTATATCTTCACTTCCAGACAAATTGCGAAGTGGG
CAGAGGAAGTATTCCAAAGACCAGAAGTTCAAAAAACAGACTGATAGAGAGCATTTAAAATCTCGGAGAGGCTCAGAAAA
TGAAAACTGACAGCCATCTCTTAAGATCCAGTTGAAACATTCAGTTAATGTTAACAGGAGAAAGATACCAAATCCTTCTA
CAGATAATTGTAATGTATCTAAAAGGGCTCATTCCCTACCATCTAGTAAGTCACAGACAAGTATTTTTCAGATGTTTCAG
AGGTATGGAAAGT
ORF - retro_fcat_1967 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
72.97 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | MAVTQNAIPSLSECQCRICVEILIEPITLPCNHTLCNPCFQATVEKASLCCPFCRRRVSSWTRYHTRRNS |
| MA..QN.IPSLSECQC.IC.EILIEP.TLPCNHTLCN.CFQ.T.EKASLCCPFCRRR.SSWTRYH.RRNS |
Retrocopy | MAAPQNGIPSLSECQCLICLEILIEPVTLPCNHTLCNECFQSTIEKASLCCPFCRRRISSWTRYHARRNS |
|
Parental | LVNMELWEIIQKHYPKECKLRVSGQESEEIVDDYQPVRLLSKPGELRREYEEEISKVEAERRASEEEENK |
| LVN.ELW.IIQKHYP.EC.LR..GQ.SEE.VDD..PV.LLSKPGELR.EYEEE..K.EAERRA.EE.E.K |
Retrocopy | LVNQELWQIIQKHYPEECRLRMAGQKSEEMVDDFKPVHLLSKPGELRKEYEEEVRKMEAERRAIEENEEK |
|
Parental | ASEAYIQRLLAEEEEEEKQQAEKRRREMEEQLKSDEELARKLSININNFCDGSVLTSPLNSRKSDTVTTK |
| .S..YIQRLLAEEEEEE..Q..KR..E.EEQLKSDEELARKLS.N.N..CD...L.SPLNS.K..TVT.K |
Retrocopy | MSKEYIQRLLAEEEEEERRQSQKRQKELEEQLKSDEELARKLSFNLN-YCDRKDLASPLNSTKPGTVTAK |
|
Parental | SQKKSKNKQTNTGDIQKYLSPKSQFGSASQCEVVQESKENSMSKETDGSIVNSPTRQDTEIEEDMPTLSP |
| ..KKSK...TNTGDIQ.Y.SPK.QFGS.S..EV.QES...SMSKETD...V.SP..QDT..EEDMPT..P |
Retrocopy | YPKKSKKRNTNTGDIQTYFSPKFQFGSTSRSEVAQESRNVSMSKETDNTVVKSPVWQDTVSEEDMPTVFP |
|
Parental | QIGMDVQEQGAKSSVESPMPQLYASGREWCLEAEVKMRPSNHDKELCVLNHEGPEARVPCSGETESACTI |
| Q..MD..EQ.A.SSVESP.PQL...GREWCL....KM..SN.DKEL.VLN..GPEARVPC.GETESACT. |
Retrocopy | QLSMDIKEQAAQSSVESPVPQLHDNGREWCLQQKIKMTRSNRDKELHVLNNKGPEARVPCFGETESACTV |
|
Parental | SGMTQIIESNTVETENEDSCLLTSKDTSKRKNQESSFEAVRDPCISAKRRKMFPRASSDQEETEINFTQK |
| SGMTQIIESN.V.TE.ED.CLL.S.D.SK.KNQES.FEAV.DPCISAKR.KMFP.AS...EETEIN.T.. |
Retrocopy | SGMTQIIESNKVDTESEDDCLLISEDISKGKNQESLFEAVTDPCISAKRKKMFPKASTAPEETEINVTEN |
|
Parental | LIDLERLLFERHKQEEQDRLLALQLQKQVDKEQMKPNRQKGSPDEYQLRPTSSPPDKLLNGQRKNSKDRN |
| .IDLE.L..ER.KQEEQD...A.QLQ...DKEQMKPNRQKGSPDEYQLRP.SS.PDKL..GQRK.SKD.. |
Retrocopy | VIDLECLPSERNKQEEQDWFFAYQLQQEIDKEQMKPNRQKGSPDEYQLRPISSLPDKLRSGQRKYSKDQK |
|
Parental | FKRQTDIEHSESRRGSKNENWQPSFKIQLKHSVNVNGRKVPNSSRDNCNVSKSAHSLQPSKSQKSI-FRC |
| FK.QTD.EH..SRRGS.NEN.QPS.KIQLKHSVNVN.RK.PN.S.DNCNVSK.AHSL..SKSQ.SI.FRC |
Retrocopy | FKKQTDREHLKSRRGSENEN*QPSLKIQLKHSVNVNRRKIPNPSTDNCNVSKRAHSLPSSKSQTSI>FRC |
|
Parental | FRGIRS |
| FRG..S |
Retrocopy | FRGMES |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
35 .69 RPM |
SRP017611_kidney |
0 .00 RPM |
15 .87 RPM |
SRP017611_liver |
0 .00 RPM |
10 .51 RPM |
Felis catus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_fcat_1967 retrocopy.
Felis catus was not studied using FANTOM5 data.
retro_fcat_1967 was not experimentally validated.
Retrocopy orthology:
Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
5 parental genes, and
5 retrocopies.