RetrogeneDB ID: | retro_fcat_1969 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | X:25947275..25947691(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BCL7C | ||
Ensembl ID: | ENSFCAG00000029090 | ||
Aliases: | None | ||
Description: | B-cell CLL/lymphoma 7C [Source:HGNC Symbol;Acc:1006] |
Percent Identity: | 64.79 % |
Parental protein coverage: | 74.19 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | EKRWV-TVGDTSLRIFK-WVPVVDPQEEERRRAGGG-AERSRGRERRGRGASPRGGGPLILLDLNDENSN |
E..WV.TVG.TSL.IFK.WVPVVD.QE.ER.RAGGG...R.......G.GA....GGPLILL.L.DENSN | |
Retrocopy | EECWV>TVGHTSLCIFK>WVPVVDLQEGERQRAGGG<GQRDSEPWSGGVGAPVP*GGPLILLCLSDENSN |
Parental | QSFHSEGSLQKGTEPSPGGTPQPSRPVSPA-GPPEGVPEDAQPPRLGQERDPGGITAGSTDEPPMLTKEE |
.SFHSE.SLQKGTE..P..TPQPS.PV.PA..P.E..PE.AQPP.L.QE.DPGG.TAG.T...P.LTKE. | |
Retrocopy | HSFHSETSLQKGTESGPWDTPQPSLPVAPA>PPLEVAPEHAQPPWLCQETDPGGLTAGDTHALPLLTKED |
Parental | PV |
PV | |
Retrocopy | PV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 2 .30 RPM |
SRP017611_kidney | 0 .00 RPM | 5 .77 RPM |
SRP017611_liver | 0 .00 RPM | 3 .23 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000007604 | 2 retrocopies | |
Bos taurus | ENSBTAG00000008412 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000016715 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000001676 | 1 retrocopy | |
Equus caballus | ENSECAG00000000482 | 1 retrocopy | |
Felis catus | ENSFCAG00000029090 | 1 retrocopy |
retro_fcat_1969 ,
|
Macaca mulatta | ENSMMUG00000003225 | 13 retrocopies | |
Mustela putorius furo | ENSMPUG00000011988 | 1 retrocopy |