RetrogeneDB ID: | retro_fcat_197 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:184485716..184486190(+) | ||
Located in intron of: | ENSFCAG00000007084 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS11 | ||
Ensembl ID: | ENSFCAG00000009196 | ||
Aliases: | None | ||
Description: | ribosomal protein S11 [Source:HGNC Symbol;Acc:10384] |
Percent Identity: | 74.68 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRG |
M..IQTE.AYQKQ.TIFQNKK.VLL.E.GKEKL..YYKNI.LGF.TPKE..E.TYIDKKCPFTGNVSIRG | |
Retrocopy | MMGIQTEHAYQKQLTIFQNKKKVLLEEIGKEKLLQYYKNISLGFQTPKETTESTYIDKKCPFTGNVSIRG |
Parental | RILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRF |
.ILSGV..KMKMQRT.V....YLHYI.KYN.F.K..KNMSV.LS.CF.DVQI.D.VTVGEC.PLS.TV.F | |
Retrocopy | *ILSGVELKMKMQRTTVTCDYYLHYI*KYN*FKKCCKNMSVPLSLCFWDVQISDTVTVGECWPLSNTVHF |
Parental | NVLKVTKAAGTKKQFQKF |
.V..VTKA..TKKQFQKF | |
Retrocopy | KVHEVTKATSTKKQFQKF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 123 .04 RPM |
SRP017611_kidney | 0 .41 RPM | 501 .27 RPM |
SRP017611_liver | 0 .10 RPM | 210 .87 RPM |