RetrogeneDB ID: | retro_fcat_1975 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | X:37169838..37170108(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CST3 | ||
Ensembl ID: | ENSFCAG00000024003 | ||
Aliases: | None | ||
Description: | cystatin-C precursor [Source:RefSeq peptide;Acc:NP_001171901] |
Percent Identity: | 91.11 % |
Parental protein coverage: | 61.22 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LSEYNKASNDAYHSRAMRVVRARKQVVAGMNYFLDVEIGRTRCTKSQPNLDTCPFHDQPHLMRKTLCSFQ |
LS.Y.K.SNDAY.SRAMRVV.ARKQ.VAG.NYFLDVEIGRTRCTKSQPNLDTCPFHDQPHLMRKTLCSFQ | |
Retrocopy | LSGYSKGSNDAYPSRAMRVVHARKQAVAGLNYFLDVEIGRTRCTKSQPNLDTCPFHDQPHLMRKTLCSFQ |
Parental | IYTVPWMGKTSLVKSSCQDA |
IYTVPWMGKTSLVKS.CQDA | |
Retrocopy | IYTVPWMGKTSLVKSGCQDA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .57 RPM | 236 .43 RPM |
SRP017611_kidney | 0 .52 RPM | 127 .48 RPM |
SRP017611_liver | 0 .20 RPM | 55 .80 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000010076 | 1 retrocopy | |
Felis catus | ENSFCAG00000024003 | 1 retrocopy |
retro_fcat_1975 ,
|
Loxodonta africana | ENSLAFG00000015020 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000028312 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000001122 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000005195 | 1 retrocopy |