RetrogeneDB ID: | retro_fcat_1979 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | X:42528231..42528543(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CISD2 | ||
Ensembl ID: | ENSFCAG00000028054 | ||
Aliases: | None | ||
Description: | CDGSH iron sulfur domain 2 [Source:HGNC Symbol;Acc:24212] |
Percent Identity: | 81.9 % |
Parental protein coverage: | 77.78 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | PVPESITGFARLTVSEWLRLLPFLGVLALLGYLAVRPFLPKKKQQKDSLINLKIQKENPKVVNEINIEDL |
PVPESI..F..LTVSEWL.LLPFLG.L.LLGYLA.RPFL.K.KQQ.DSLINLKIQKEN.KVVNEINIEDL | |
Retrocopy | PVPESIIRFTQLTVSEWLWLLPFLGILVLLGYLAIRPFLQKEKQQ-DSLINLKIQKENLKVVNEINIEDL |
Parental | CLTKAAYCRCWRSKTFPACDGSHNKHNELTGDNVG |
.LTKAAYCRC..SKT.PACD.SHNKHN.LTG.NVG | |
Retrocopy | GLTKAAYCRCSHSKTLPACDSSHNKHNVLTGGNVG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 8 .15 RPM |
SRP017611_kidney | 0 .00 RPM | 19 .07 RPM |
SRP017611_liver | 0 .00 RPM | 12 .33 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000010779 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000015530 | 1 retrocopy | |
Felis catus | ENSFCAG00000028054 | 1 retrocopy |
retro_fcat_1979 ,
|
Mus musculus | ENSMUSG00000028165 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000026930 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000013943 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000001408 | 1 retrocopy |