RetrogeneDB ID: | retro_fcat_1981 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | X:43105920..43106297(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL32 | ||
Ensembl ID: | ENSFCAG00000030450 | ||
Aliases: | None | ||
Description: | ribosomal protein L32 [Source:HGNC Symbol;Acc:10336] |
Percent Identity: | 76.92 % |
Parental protein coverage: | 95.56 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRK |
.VKPKIVKKR...FI...SD.YVKIK.NW.KPRGIDNRV.RRFKGQILMP.IGY..NKKTKHMLPSGF.K | |
Retrocopy | IVKPKIVKKRMN*FIQRHSDQYVKIKCNWWKPRGIDNRVCRRFKGQILMPSIGYRNNKKTKHMLPSGFQK |
Parental | FLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRK-AIVERAAQLAIRVTNPNARLRSEENE |
FLVHN.....VLLMCNKSY.AEIA.NVSSKN.K..IV.RAAQLAIRVTN.NA.L.S.ENE | |
Retrocopy | FLVHN---SQVLLMCNKSYYAEIAYNVSSKNHK<TIVKRAAQLAIRVTNSNAMLHSKENE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 27 .55 RPM |
SRP017611_kidney | 0 .00 RPM | 135 .83 RPM |
SRP017611_liver | 0 .00 RPM | 69 .75 RPM |