RetrogeneDB ID: | retro_fcat_1999 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | X:80697157..80697838(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ISG20L2 | ||
Ensembl ID: | ENSFCAG00000006559 | ||
Aliases: | None | ||
Description: | interferon stimulated exonuclease gene 20kDa-like 2 [Source:HGNC Symbol;Acc:25745] |
Percent Identity: | 71.49 % |
Parental protein coverage: | 65.23 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 0 |
Parental | EFQSALPKTRSHPARSQKKGPQKNPTQKNAPQNSTQSHLENKCSGASQKTPGKMVAIDCEMVGTGPKGHV |
EFQSALPK..SH.....K.GPQKNPTQKNA..NSTQSH.ENKCSGAS.K.P.KM..IDCEMVGTG..GH. | |
Retrocopy | EFQSALPKIMSHSTCL*K*GPQKNPTQKNALWNSTQSHSENKCSGAS*KMPKKMMPIDCEMVGTGSQGHI |
Parental | SSLARCSIVNYHGDVLYDEYVLPPCHIVDYRTRWSGIRKQHMVNATPFKVARSQILKILAGKIVVGHAIH |
SSLA.CS.VNYHGDVLYDEY.LPPCHIVDYRTR.SGI.KQ.M.N.TPFK....QILKIL.GKIVVGH.IH | |
Retrocopy | SSLA*CSTVNYHGDVLYDEYILPPCHIVDYRTR*SGIWKQCMMNDTPFKITQNQILKILTGKIVVGHPIH |
Parental | NDFKALQYSHPKSLTRDTSHI-PPLNRKAECPENATVSLKCLTKKLLNRDIQVGKSGHSSVEDAQATMEL |
N.FKAL.Y.H..SLT..TSHI.P...RK..C.ENAT.SLK.LTKKLL..DIQ.GKSGHSSVEDAQ.T..L | |
Retrocopy | N-FKAL*YFHTTSLTCNTSHILPAIKRKVDCLENATMSLKNLTKKLLKWDIQIGKSGHSSVEDAQVTIKL |
Parental | YKLVEVEWEQHLAQNPPK |
Y.L.EV.WEQ.....P.. | |
Retrocopy | YELAEVGWEQPAPESPKR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 14 .92 RPM |
SRP017611_kidney | 0 .00 RPM | 11 .75 RPM |
SRP017611_liver | 0 .00 RPM | 7 .58 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Felis catus | ENSFCAG00000006559 | 1 retrocopy |
retro_fcat_1999 ,
|
Macaca mulatta | ENSMMUG00000000037 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012742 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000011402 | 2 retrocopies |