RetrogeneDB ID: | retro_fcat_200 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:194602136..194602696(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS8 | ||
Ensembl ID: | ENSFCAG00000022996 | ||
Aliases: | None | ||
Description: | ribosomal protein S8 [Source:HGNC Symbol;Acc:10441] |
Percent Identity: | 59.07 % |
Parental protein coverage: | 91.58 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 5 |
Parental | KRKPYHKKRKYELGRPAANTK---IGPRRIHTVRV-RGGNKKYRALRLDVGNFSWGSECC-TRKTRIIDV |
K..P.H.KR..ELG.P.AN.....I.....HT..V.R.G..K..A.RLDVGN..W.S..C.T..TRI.D. | |
Retrocopy | KCQPCHEKRERELGCPIANNELASIXXXXXHTQSV>RQGSNK*HAWRLDVGNVPWDSK-C>THRTRITDF |
Parental | VYNASNNELVR-TKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQ-KKY |
VY.ASNN.LV..TKTLVKN.I.LI..T....WY.SHYAL.L..KKG...TPE.EEILN.K.S..IQ.KK. | |
Retrocopy | VYDASNNQLVP<TKTLVKNGIILINHTLSQ*WYGSHYALTLDCKKGVRPTPEDEEILNTKQSMTIQ<KKQ |
Parental | DERKKNAKIS-SLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRK |
...KKNAKIS..LL.EQFQ.GKLLA..ASR.GQ.G.A.GYV.EG..LEFYLRK | |
Retrocopy | EDKKKNAKIS<RLLKEQFQPGKLLAYTASRSGQRG*AHGYVPEGRRLEFYLRK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 88 .26 RPM |
SRP017611_kidney | 0 .00 RPM | 417 .90 RPM |
SRP017611_liver | 0 .00 RPM | 208 .75 RPM |