RetrogeneDB ID: | retro_fcat_2010 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | X:96723247..96723596(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL34 | ||
Ensembl ID: | ENSFCAG00000015502 | ||
Aliases: | None | ||
Description: | ribosomal protein L34 [Source:HGNC Symbol;Acc:10340] |
Percent Identity: | 76.27 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKK-VGKAPKSACGVCPGRLRGVRAVRPKVLMRLSK |
MVQ.....RRLSY.TA.NKTRLS.TPGNRIVYLYTKK.V.K..K.ACG.CPG.LRGVRA.RP.VLMRL.. | |
Retrocopy | MVQHSATCRRLSYATALNKTRLSQTPGNRIVYLYTKK>VRKHQK-ACGMCPGWLRGVRAGRPEVLMRLPT |
Parental | TKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVLKAQAQSQKAK |
TK.HVSR.YGGS..AKCVRDRIK.AFL.EEQKIVVKV.KA.AQSQK.K | |
Retrocopy | TKTHVSRTYGGSARAKCVRDRIKHAFLTEEQKIVVKVSKAKAQSQKVK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 56 .47 RPM |
SRP017611_kidney | 0 .00 RPM | 179 .11 RPM |
SRP017611_liver | 0 .00 RPM | 84 .61 RPM |