RetrogeneDB ID: | retro_fcat_218 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:13756953..13757246(-) | ||
Located in intron of: | ENSFCAG00000031022 | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000024005 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000031005 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.86 % |
Parental protein coverage: | 97.03 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | QEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTT-HLKKLKESYCQRQGVPMNSLRFLFEGQRIA |
QEAKPSTEDLGD.K.GEYIKL.VIGQD.S.IHFKVKMTT.HLKKLKESYC.R.GVPMNSLRFLF.G.RIA | |
Retrocopy | QEAKPSTEDLGDEKVGEYIKLRVIGQDGSAIHFKVKMTT<HLKKLKESYCPREGVPMNSLRFLFAGPRIA |
Parental | DNHTPKELGMEEEDVIEVYQEQTGGHSTI |
DNH.PKE.GMEEEDVI.VYQEQTGGH.TI | |
Retrocopy | DNHAPKEVGMEEEDVIGVYQEQTGGHPTI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 1 .72 RPM | 24 .56 RPM |
SRP017611_kidney | 1 .75 RPM | 26 .69 RPM |
SRP017611_liver | 1 .11 RPM | 10 .82 RPM |