RetrogeneDB ID: | retro_fcat_220 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:30508175..30509189(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EEF1A1 | ||
Ensembl ID: | ENSFCAG00000030977 | ||
Aliases: | EEF1A1, EF1A | ||
Description: | Elongation factor 1-alpha 1 [Source:UniProtKB/Swiss-Prot;Acc:Q66RN5] |
Percent Identity: | 83.72 % |
Parental protein coverage: | 73.38 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERG |
MGKE.T.INI..IGHVD..KSTTTGHLI.KCGGIDKRTIEKFEKEAAEMG.GSFKYAWV.DKLKAE.ERG | |
Retrocopy | MGKEETPINIIIIGHVDADKSTTTGHLISKCGGIDKRTIEKFEKEAAEMGQGSFKYAWVSDKLKAEHERG |
Parental | ITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADC-AVLIVAAGVGEFEAG-ISKNGQTREH-- |
IT.DISLWKFETSKYYVTI.DAPGHRDF.KNMITGTSQADC....I.A.GVGEFEAG..SK.G.TREH.. | |
Retrocopy | ITTDISLWKFETSKYYVTITDAPGHRDFVKNMITGTSQADC>VLIIAA-GVGEFEAG<LSKKGLTREHDP |
Parental | -ALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPS |
.ALLAYTLGVKQLIV.VNKMDSTEP.YSQKRYEEIVKEV.TYIKKIGYNPDT.AFVPISGWNGDN.L.PS | |
Retrocopy | *ALLAYTLGVKQLIVSVNKMDSTEPLYSQKRYEEIVKEVGTYIKKIGYNPDTIAFVPISGWNGDNILKPS |
Parental | ANMPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG |
A.M.WFKG.K.T.KDGN..GTT....LDCILPPT.PTDKPLRL.LQDVYKIGGIGT.PVGRVETGVLKPG | |
Retrocopy | AHMHWFKG*KDTCKDGNGGGTT---PLDCILPPTHPTDKPLRLLLQDVYKIGGIGTIPVGRVETGVLKPG |
Parental | MVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAG |
.V.TFAPV.VT..VKSVEMHHEALSEAL.G.NVGFNVKNVSVKDV.RGNVA.DSKNDPPMEA.G | |
Retrocopy | VVATFAPVSVTAKVKSVEMHHEALSEALLGANVGFNVKNVSVKDVCRGNVAADSKNDPPMEASG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .92 RPM | 1486 .30 RPM |
SRP017611_kidney | 1 .55 RPM | 9381 .03 RPM |
SRP017611_liver | 1 .21 RPM | 6481 .18 RPM |